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Home All issues Volume 38 / No 6-7 (Juin–Juillet 2022) Med Sci (Paris), 38 6-7 (2022) 600-607 References
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Issue
Med Sci (Paris)
Volume 38, Number 6-7, Juin–Juillet 2022
Page(s) 600 - 607
Section Repères
DOI https://doi.org/10.1051/medsci/2022079
Published online 29 June 2022
  1. Zhu N, Zhang D, Wang W, et al. A Novel Coronavirus from Patients with Pneumonia in China, 2019. N Engl J Med 2019 ; 382 : 727–733. [Google Scholar]
  2. Guan W, Ni Z, Hu Y, et al. Characteristics Clinical of Coronavirus Disease 2019 in China. New. N Engl J Med 2020 ; 58 : 711–712. [Google Scholar]
  3. Huang C, Wang Y, Li X, et al.. Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China. Lancet 2022 ; 395 : 497–506. [Google Scholar]
  4. OMS. Novel Coronavirus (2019-nCoV) Situation Report-1. 2020; https://www.who.int/docs/default-source/coronaviruse/situation-reports/20200121-sitrep-1-2019-ncov.pdf. [Google Scholar]
  5. Frutos R, Lopez-Roig M, Serra-Cobo J, Devaux C.A. COVID-19: The conjunction of events leading to the pandemic and lessons to learn for future threats. Front Med 2020 : 7 : 223. [CrossRef] [Google Scholar]
  6. Frutos R, Pliez O, Gavotte L, Devaux CA. There is no “origin” to SARS-CoV-2. Environ Res 2022; 207 : 112173. [CrossRef] [PubMed] [Google Scholar]
  7. Li Q, Guan X, Wu P, et al. Early transmission dynamics in Wuhan, China, of novel coronavirus-infected pneumonia. N Engl J Med 2020; 382 : 1199–207. [CrossRef] [PubMed] [Google Scholar]
  8. Lai A. Early phylogenetic estimate of the effective reproduction number of SARS-CoV-2. J Med Virol 2020; 92 : 675–9. [CrossRef] [PubMed] [Google Scholar]
  9. Cao Y, Li L, Feng Z, et al. Comparative genetic analysis of the novel coronavirus (2019-nCoV/SARS-CoV-2) receptor ACE2 in different populations. Cell Discov 2020; 6 : 1–4. [PubMed] [Google Scholar]
  10. Johns Hopkins University. 2022. https://coronavirus.jhu.edu/map.html. [Google Scholar]
  11. Coelho MTP, Rodrigues JFM, Medina AM, et al. Global expansion of COVID-19 pandemic is driven by population size and airport connections. PeerJ 2020; 8: e9708. https://doi.org/10.7717/peerj.9708. [CrossRef] [Google Scholar]
  12. Andino R, Domingo E. Viral quasispecies. Virology 2015 ; 479 : 46–51. [CrossRef] [Google Scholar]
  13. Song HD, Tu CC, Zhang GW, et al. Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human. Proc Natl Acad Sci U S A 2005 ; 102 : 2430–2435. [CrossRef] [PubMed] [Google Scholar]
  14. Karamitros T, Papadopoulou G, Bousali M, et al. SARS-CoV-2 exhibits intra-host genomic plasticity and low-frequency polymorphic quasispecies. J Clin Virol 2020; 131 : 104585. [CrossRef] [PubMed] [Google Scholar]
  15. Woolhouse ME, Adair K, Brierley L. RNA viruses: a case study of the biology of emerging infectious diseases. Microbiol Spectr 2013 ; 1 : 10.1128. [CrossRef] [Google Scholar]
  16. Power AG, Mitchell CE. Pathogen spillover in disease epidemics. Am Nat 2004 ; 164 : S79–S89. [CrossRef] [PubMed] [Google Scholar]
  17. Boni MF, Lemey P, Jiang X, et al. Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic. Nat Microbiol 2020; 5 : 1408–17. [CrossRef] [PubMed] [Google Scholar]
  18. Burki T. The origin of SARS-CoV-2. Lancet Infect Dis 2020; 20 : 1018–9. [CrossRef] [PubMed] [Google Scholar]
  19. Frutos R, Serra-Cobo J, Chen T, Devaux CA. COVID-19: Time to exonerate the pangolin from the transmission of SARS-CoV-2 to humans. Infect Genet Evol 2020; 84 : 104493. [CrossRef] [PubMed] [Google Scholar]
  20. Lee J, Hughes T, Lee MH, et al. No evidence of coronaviruses or other potentially zoonotic viruses in Sunda pangolins (Manis javanica) entering the wildlife trade via Malaysia. Ecohealth 2020; 17 : 406–18. [CrossRef] [PubMed] [Google Scholar]
  21. Tang X, Wu C, Li X, et al. On the origin and continuing evolution of SARS-CoV-2. Natl Sci Rev 2020; 7 : 1012–23. [CrossRef] [PubMed] [Google Scholar]
  22. Munnink BBO, Sikkema RS, Nieuwenhuijse DF, et al. Transmission of SARS-CoV-2 on mink farms between humans and mink and back to humans. Science 2021; 371 : 172–7. [CrossRef] [PubMed] [Google Scholar]
  23. Ge XY, Wang N, Zhang W, et al. Coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft. Virol Sin 2016 ; 31 : 31–40. [Google Scholar]
  24. Zhou P, Yang XL, Wang XG, et al. A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature 2020; 579 : 270–3. [CrossRef] [PubMed] [Google Scholar]
  25. Zhou H, Chen X, Hu T, et al. A novel bat coronavirus closely related to SARS-CoV-2 contains natural insertions at the S1/S2 cleavage site of the spike protein. Curr Biol 2021; 30 : 2196–203.e3. [Google Scholar]
  26. Delaune D, Hul V, Karlsson EA, Hassanin A, et al. A novel SARS-CoV-2 related coronavirus in bats from Cambodia. Nat Commun 2021; 12 : 6563. [CrossRef] [PubMed] [Google Scholar]
  27. Wacharapluesadee S, Tan CW, Maneeorn P, et al. Evidence for SARS-CoV-2 related coronaviruses circulating in bats and pangolins in Southeast Asia. Nat Commun 2021; 12 : 972. [CrossRef] [PubMed] [Google Scholar]
  28. Domingo JL. What we know and what we need to know about the origin of SARS-CoV-2. Environ Res 2021; 200 : 111785. [CrossRef] [PubMed] [Google Scholar]
  29. Rahalkar MC, Bahulikar RA. Lethal pneumonia cases in Mojiang miners (2012) and the mineshaft could provide important clues to the origin of SARS-CoV-2. Front Public Health 2020; 8 : 581569. [CrossRef] [PubMed] [Google Scholar]
  30. Menachery VD, Yount BL, Debbink K, et al. A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence. Nat Med 2015 ; 21 : 1508–1513. [CrossRef] [PubMed] [Google Scholar]
  31. Frutos R, Javelle E, Barberot C, et al. Origin of COVID-19: Dismissing the Mojiang mine theory and the laboratory accident narrative. Environ Res 2022; 204 : 112141. [CrossRef] [PubMed] [Google Scholar]
  32. Zhou P, Yang XL, Wang XG, et al. Addendum: a pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature 2020; 588 : E6. [CrossRef] [PubMed] [Google Scholar]
  33. Daszak P, Cunningham AA, Hyatt AD. Emerging infectious diseases of wildlife–threats to biodiversity and human health. Science 2020; 287 : 443–9. [Google Scholar]
  34. Plowright RK, Parrish CR, McCallum H, et al. Pathways to zoonotic spillover. Nat Rev Microbiol 2017 ; 15 : 502–510. [CrossRef] [PubMed] [Google Scholar]
  35. Holmes EC, Goldstein SA, Rasmussen AL, et al. The origins of SARS-CoV-2: A critical review. Cell 2021; 184 : 4848–56. [CrossRef] [PubMed] [Google Scholar]
  36. Xia S, Lan Q, Su S, et al. The role of furin cleavage site in SARS-CoV-2 spike protein-mediated membrane fusion in the presence or absence of trypsin. Signal Transduct Target Ther 2020; 5 : 92. [CrossRef] [PubMed] [Google Scholar]
  37. Zhou B, Thao TTN, Hoffmann D, et al. SARS-CoV-2 spike D614G change enhances replication and transmission. Nature 2021; 592 : 122–7. [CrossRef] [PubMed] [Google Scholar]
  38. Kumata R, Ito J, Takahashi K, et al. A tissue level atlas of the healthy human virome. BMC Biol 2020; 18 : 55. [CrossRef] [PubMed] [Google Scholar]
  39. Afelt A, Lacroix A, Zawadzka-Pawlewska U, et al. Distribution of bat-borne viruses and environment patterns. Infect Genet Evol 2017 ; 58 : 181–191. [Google Scholar]
  40. Afelt A, Frutos R, Devaux C. Bats, coronaviruses and deforestation: towards the emergence of novel infectious diseases?. Front Microbiol 2018 ; 9 : 702. [CrossRef] [PubMed] [Google Scholar]
  41. Plowright RK, Eby P, Hudson PJ, et al. Ecological dynamics of emerging bat virus spillover. Proc Biol Sci 2015 ; 282 : 20142124. [PubMed] [Google Scholar]
  42. MacLean OA, Lytras S, Weaver S, et al. Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen. PLoS Biol 2021; 19 : e3001115. [CrossRef] [PubMed] [Google Scholar]
  43. Frutos R, Gavotte L, Devaux CA. Unravelling the origin of SARS-CoV-2: is the model good? New Microbes New Infect 2021; 43 : 100918. [CrossRef] [PubMed] [Google Scholar]
  44. Hartfield M, Alizon S. Introducing the outbreak threshold in epidemiology. PLoS Pathog 2013 ; 9 : e1003277. [CrossRef] [PubMed] [Google Scholar]
  45. Frutos R, Gavotte L, Devaux CA. Understanding the origin of COVID-19 requires to change the paradigm on zoonotic emergence from the spillover to the circulation model. Infect. Genet Evol 2021; 95 : 104812. [CrossRef] [Google Scholar]
  46. Keita AK, Koundouno FR, Faye M, et al. Resurgence of Ebola virus in 2021 in Guinea suggests a new paradigm for outbreaks. Nature 2021; 597 : 539–43. [CrossRef] [PubMed] [Google Scholar]

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