EDP Sciences logo
Subscriber Authentication Point
Search
Menu
Home All issues Volume 41 / No 1 (Janvier 2025) Med Sci (Paris), 41 1 (2025) 53-61 References
Issue
Med Sci (Paris)
Volume 41, Number 1, Janvier 2025
Les microbes, l’Anthropocène et nous
Page(s) 53 - 61
Section M/S Revues
DOI https://doi.org/10.1051/medsci/2024190
Published online 31 January 2025
  1. Gutmann L, Lortholary O. Coexister avec la résistance aux antibiotiques : une réalité internationale en 2010. Med Sci (Paris) 2010 ; 26 : 895–6. [CrossRef] [EDP Sciences] [PubMed] [Google Scholar]
  2. Janzen DH. When is it coevolution? Evolution 1980 ; 34 : 611–2. [CrossRef] [Google Scholar]
  3. Mazel F, Guisan A, Parfrey LW. Transmission mode and dispersal traits correlate with host specificity in mammalian gut microbes. Mol Ecol 2024 ; 33 : e16862. [CrossRef] [PubMed] [Google Scholar]
  4. Song SJ, Sanders JG, Delsuc F, et al. Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats. mBio 2020 ; 11 : e02901–19. [PubMed] [Google Scholar]
  5. Amato KR, Mallott EK, McDonald D, et al. Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny. Genome Biol 2019 ; 20 : 201. [CrossRef] [PubMed] [Google Scholar]
  6. Wibowo MC, Yang Z, Borry M, et al. Reconstruction of ancient microbial genomes from the human gut. Nature 2021 ; 594 : 234–9. [CrossRef] [PubMed] [Google Scholar]
  7. Good BH, Rosenfeld LB. Eco-evolutionary feedbacks in the human gut microbiome. Nat Commun 2023 ; 14 : 7146. [CrossRef] [PubMed] [Google Scholar]
  8. Groussin M, Mazel F. Impact of the evolution of mammalian intestinal microbiotas on human health. Med Sci (Paris) 2017 ; 33 : 1038–42. [CrossRef] [EDP Sciences] [PubMed] [Google Scholar]
  9. Moeller AH, Li Y, Mpoudi Ngole E, et al. Rapid changes in the gut microbiome during human evolution. Proc Natl Acad Sci U S A 2014 ; 111 : 16431–5. [CrossRef] [PubMed] [Google Scholar]
  10. Rühlemann MC, Bang C, Gogarten JF, et al. Functional host-specific adaptation of the intestinal microbiome in hominids. Nat Commun 2024 ; 15 : 326. [CrossRef] [PubMed] [Google Scholar]
  11. Moraïs S, Winkler S, Zorea A, et al. Cryptic diversity of cellulose-degrading gut bacteria in industrialized humans. Science 2024 ; 383 : eadj9223. [CrossRef] [PubMed] [Google Scholar]
  12. Zhao S, Lieberman TD, Poyet M, et al. Adaptive Evolution within Gut Microbiomes of Healthy People. Cell Host Microbe 2019 ; 25 : 656–67.e8. [CrossRef] [PubMed] [Google Scholar]
  13. Vasquez KS, Willis L, Cira NJ, et al. Quantifying rapid bacterial evolution and transmission within the mouse intestine. Cell Host Microbe 2021 ; 29 : 1454–68.e4. [CrossRef] [PubMed] [Google Scholar]
  14. Frazão N, Konrad A, Amicone M, et al. Two modes of evolution shape bacterial strain diversity in the mammalian gut for thousands of generations. Nat Commun 2022 ; 13 : 5604. [CrossRef] [PubMed] [Google Scholar]
  15. Vasquez KS, Wong DPGH, Pedro MF, et al. High-resolution lineage tracking of within-host evolution and strain transmission in a human gut symbiont across ecological scales. bioRxiv 2024 ; 2024.02.17.580834. [Google Scholar]
  16. Yilmaz B, Mooser C, Keller I, et al. Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell Host Microbe 2021 ; 29 : 650–63.e9. [CrossRef] [PubMed] [Google Scholar]
  17. Poyet M, Groussin M, Gibbons SM, et al. A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research. Nat Med 2019 ; 25 : 1442–52. [CrossRef] [PubMed] [Google Scholar]
  18. Chen DW, Garud NR. Rapid evolution and strain turnover in the infant gut microbiome. Genome Res 2022 ; 32 : 1124–36. [CrossRef] [PubMed] [Google Scholar]
  19. Dapa T, Ramiro RS, Pedro MF, et al. Diet leaves a genetic signature in a keystone member of the gut microbiota. Cell Host Microbe 2022 ; 30 : 183–99.e10. [CrossRef] [PubMed] [Google Scholar]
  20. Fishbein SRS, Mahmud B, Dantas G. Antibiotic perturbations to the gut microbiome. Nat Rev Microbiol 2023 ; 21 : 772–88. [CrossRef] [PubMed] [Google Scholar]
  21. Roodgar M, Good BH, Garud NR, et al. Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment. Genome Res 2021 ; 31 : 1433–46. [CrossRef] [PubMed] [Google Scholar]
  22. Nies L de, Busi SB, Tsenkova M, et al. Evolution of the murine gut resistome following broad-spectrum antibiotic treatment. Nat Commun 2022 ; 13 : 1–11. [CrossRef] [PubMed] [Google Scholar]
  23. Barroso-Batista J, Pedro MF, Sales-Dias J, et al. Specific Eco-evolutionary Contexts in the Mouse Gut Reveal Escherichia coli Metabolic Versatility. Curr Biol 2020 ; 30 : 1049–62.e7. [CrossRef] [PubMed] [Google Scholar]
  24. Frazão N, Sousa A, Lässig M, et al. Horizontal gene transfer overrides mutation in Escherichia coli colonizing the mammalian gut. Proc Natl Acad Sci U S A 2019 ; 116 : 17906–15. [CrossRef] [PubMed] [Google Scholar]
  25. Smillie CS, Smith MB, Friedman J, et al. Ecology drives a global network of gene exchange connecting the human microbiome. Nature 2011 ; 480 : 241–4. [CrossRef] [PubMed] [Google Scholar]
  26. Groussin M, Poyet M, Sistiaga A, et al. Elevated rates of horizontal gene transfer in the industrialized human microbiome. Cell 2021 ; 184 : 2053–67.e18. [CrossRef] [PubMed] [Google Scholar]
  27. Pudlo NA, Pereira GV, Parnami J, et al. Diverse events have transferred genes for edible seaweed digestion from marine to human gut bacteria. Cell Host Microbe 2022 ; 30 : 314–28.e11. [CrossRef] [PubMed] [Google Scholar]
  28. Didelot X, Walker AS, Peto TE, et al. Within-host evolution of bacterial pathogens. Nat Rev Microbiol 2016 ; 14 : 150–62. [CrossRef] [PubMed] [Google Scholar]
  29. Yang Y, Nguyen M, Khetrapal V, et al. Within-host evolution of a gut pathobiont facilitates liver translocation. Nature 2022 ; 607 : 563–70. [CrossRef] [PubMed] [Google Scholar]
  30. Elhenawy W, Tsai CN, Coombes BK. Host-Specific Adaptive Diversification of Crohn’s Disease-Associated Adherent-Invasive Escherichia coli. Cell Host Microbe 2019 ; 25 : 301–12.e5. [CrossRef] [PubMed] [Google Scholar]
  31. Sarkar A, Mclnroy CJA, Harty S, et al. Microbial transmission in the social microbiome and host health and disease. Cell 2024 ; 187 : 17–43. [CrossRef] [PubMed] [Google Scholar]
  32. Valles-Colomer M, Blanco-Miguez A, Manghi P, et al. The person-to-person transmission landscape of the gut and oral microbiomes. Nature 2023 ; 614 : 125–35. [CrossRef] [PubMed] [Google Scholar]
  33. Frazão N, Gordo I. Shared Evolutionary Path in Social Microbiomes. Mol Biol Evol 2023 ; 40 : msad153. [CrossRef] [PubMed] [Google Scholar]
  34. Garud NR, Good BH, Hallatschek O, et al. Evolutionary dynamics of bacteria in the gut microbiome within and across hosts. PLoS Biol 2019 ; 17 : e3000102. [CrossRef] [PubMed] [Google Scholar]
  35. Hildebrand F, Gossmann TI, Frioux C, et al. Dispersal strategies shape persistence and evolution of human gut bacteria. Cell Host Microbe 2021 ; 29 : 1167–76.e9. [CrossRef] [PubMed] [Google Scholar]
  36. Enav H, Paz I, Ley RE. Strain tracking in complex microbiomes using synteny analysis reveals per-species modes of evolution. Nat Biotechnol 2024 ; 1–11. [PubMed] [Google Scholar]
  37. Groussin M, Mazel F, Alm EJ. Co-evolution and Co-speciation of Host-Gut Bacteria Systems. Cell Host Microbe 2020 ; 28 : 12–22. [CrossRef] [PubMed] [Google Scholar]
  38. Suzuki TA, Fitzstevens JL, Schmidt VT, et al. Codiversification of gut microbiota with humans. Science 2022 ; 377 : 1328–32. [CrossRef] [PubMed] [Google Scholar]
  39. Suzuki TA, Ley RE. The role of the microbiota in human genetic adaptation. Science 2020 ; 370 : eaaz6827. [CrossRef] [PubMed] [Google Scholar]
  40. Moeller AH, Caro-Quintero A, Mjungu D, et al. Cospeciation of gut microbiota with hominids. Science 2016 ; 353 : 380–2. [CrossRef] [PubMed] [Google Scholar]
  41. Sanders JG, Sprockett DD, Li Y, et al. Widespread extinctions of co-diversified primate gut bacterial symbionts from humans. Nat Microbiol 2023 ; 8 : 1039–50. [CrossRef] [PubMed] [Google Scholar]

Current usage metrics show cumulative count of Article Views (full-text article views including HTML views, PDF and ePub downloads, according to the available data) and Abstracts Views on Vision4Press platform.

Data correspond to usage on the plateform after 2015. The current usage metrics is available 48-96 hours after online publication and is updated daily on week days.

Initial download of the metrics may take a while.