EDP Sciences logo
Subscriber Authentication Point
Search
Menu
Home All issues Volume 34 / No 12 (Décembre 2018) Med Sci (Paris), 34 12 (2018) 1087-1091 References
Open Access
Issue
Med Sci (Paris)
Volume 34, Number 12, Décembre 2018
Page(s) 1087 - 1091
Section M/S Revues
DOI https://doi.org/10.1051/medsci/2018300
Published online 09 January 2019
  1. La Scola B, Audic S, Robert C, et al. A giant virus in amoebae. Science 2003 ; 299 : 2033. [Google Scholar]
  2. Raoult D, Audic S, Robert C, et al. The 1.2-megabase genome sequence of Mimivirus. Science 2004 ; 306 : 1344–1350. [Google Scholar]
  3. Claverie JM, Abergel C. Les virus géants. Etat des connaissances, énigmes, controverses et perspective. Med Sci (Paris) 2016 ; 32 : 1087–1096. [CrossRef] [EDP Sciences] [PubMed] [Google Scholar]
  4. Abergel C, Legendre M, Claverie JM. The rapidly expanding universe of giant viruses : Mimivirus, Pandoravirus. Pithovirus and Mollivirus. FEMS Microbiol Rev 2015 ; 39 : 779–796. [CrossRef] [Google Scholar]
  5. Krupovic M, Koonin EV. Self-synthesizing transposons: unexpected key player in the evolution of viruses and defense systems. Curr Opin Microbiol 2016 ; 31 : 25–33. [CrossRef] [PubMed] [Google Scholar]
  6. Nasir A, Caetano-Anollés G. A phylogenomic data-driven exploration of viral origins and evolution. Sci Adv 2015 ; 1 : e1500527. [CrossRef] [PubMed] [Google Scholar]
  7. Claverie JM, Abergel C. Open questions about giant viruses. Adv Virus Res 2013 ; 85 : 25–56. [Google Scholar]
  8. Filée J.. Multiple occurrences of giant virus core genes acquired by eukaryotic genomes: The visible part of the iceberg?. Virology 2014 ; 466–7 : 53–59. [Google Scholar]
  9. Takemura M, Yokobori S, Ogata H. Evolution of eukaryotic DNA polymerases via interaction between cells and large DNA viruses. J Mol Evol 2015 ; 81 : 24–33. [CrossRef] [PubMed] [Google Scholar]
  10. Pradeu T, Kostyrka G, Dupré J. Understanding viruses: Philosophical investigations. Stud Hist Philos Biol Biomed Sci 2016 ; 59 : 57–63. [CrossRef] [PubMed] [Google Scholar]
  11. Claverie JM, Abergel C. Giant viruses: The difficult breaking of multiple epistemological barriers. Stud Hist Philos Biol Biomed Sci 2016 ; 59 : 89–99. [CrossRef] [PubMed] [Google Scholar]
  12. Philippe N, Legendre M, Doutre G, et al. Pandoraviruses : amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes. Science 2013 ; 341 : 281–286. [Google Scholar]
  13. Legendre M, Bartoli J, Shmakova L, et al. Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology. Proc Natl Acad Sci USA 2014 ; 111 : 4274–4279. [CrossRef] [Google Scholar]
  14. Legendre M, Lartigue A, Bertaux L, et al. In-depth study of Mollivirus sibericum, a new 30,000-y-old giant virus infecting Acanthamoeba. Proc Natl Acad Sci USA 2015 ; 112 : E5327–E5335. [CrossRef] [Google Scholar]
  15. Abergel C, Claverie JM. Diversité des virus géants. Virologie 2016 ; 20 : 61–63. [Google Scholar]
  16. Antwerpen MH, Georgi E, Zoeller L, et al. Whole-genome sequencing of a pandoravirus isolated from keratitis-inducing acanthamoeba. Genome Announc 2015 ; 3 : e00136–e00115. [CrossRef] [PubMed] [Google Scholar]
  17. Waters E, Hohn MJ, Ahel I, et al. The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proc Natl Acad Sci USA 2003 ; 100 : 12984–12988. [CrossRef] [Google Scholar]
  18. Corradi N, Pombert JF, Farinelli L, et al. The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis. Nat Commun 2010 ; 1 : 77. [CrossRef] [PubMed] [Google Scholar]
  19. López-Madrigal S, Latorre A, Porcar M, et al. Complete genome sequence of “Candidatus Tremblaya princeps” strain PCVAL, an intriguing translational machine below the living-cell status. J Bacteriol 2011 ; 193 : 5587–5588. [CrossRef] [PubMed] [Google Scholar]
  20. Moran NA, Bennett GM. The tiniest tiny genomes. Annu Rev Microbiol 2014 ; 68 : 195–215. [Google Scholar]
  21. Lwoff A.. The concept of virus. J Gen Microbiol 1957 ; 17 : 239–253. [CrossRef] [PubMed] [Google Scholar]
  22. Filée J.. Route of NCLDV evolution: the genomic accordion. Curr Opin Virol 2013 ; 3 : 595–599. [CrossRef] [PubMed] [Google Scholar]
  23. Pereyre S, Sirand-Pugnet P, Beven L, et al. Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas. PLoS Genet 2009 ; 5 : e1000677. [PubMed] [Google Scholar]
  24. Legendre M, Fabre E, Poirot O, et al. Diversity and evolution of the emerging Pandoraviridae family. Nat Commun 2018 ; 9 : 2285. [CrossRef] [PubMed] [Google Scholar]
  25. Aherfi S, Andreani J, Baptiste E, et al. A large open pangenome and a small core genome for giant Pandoraviruses. Front Microbiol 2018 ; 9 : 1486. [CrossRef] [PubMed] [Google Scholar]
  26. Carvunis AR, Rolland T, Wapinski I, et al. Proto-genes and de novo gene birth. Nature 2012 ; 487 : 370–374. [CrossRef] [PubMed] [Google Scholar]
  27. Donoghue MT, Keshavaiah C, Swamidatta SH, Spillane C. Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana. BMC Evol Biol 2011 ; 11 : 47. [CrossRef] [PubMed] [Google Scholar]
  28. Levine MT, Jones CD, Kern AD, et al. Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression. Proc Natl Acad Sci USA 2006 ; 103 : 9935–9939. [CrossRef] [Google Scholar]
  29. Heinen TJ, Staubach F, Häming D, Tautz D. Emergence of a new gene from an intergenic region. Curr Biol 2009 ; 19 : 1527–1531. [CrossRef] [PubMed] [Google Scholar]
  30. Tautz D, Domazet-Lošo T. The evolutionary origin of orphan genes. Nat Rev Genet 2011 ; 12 : 692–702. [CrossRef] [PubMed] [Google Scholar]
  31. Neme R, Tautz D. Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution. BMC Genomics 2013 ; 14 : 117. [CrossRef] [PubMed] [Google Scholar]
  32. Guerzoni D, McLysaght A. De novo genes arise at a slow but steady rate along theprimate lineage and have been subject to incomplete lineage sorting. Genome Biol Evol 2016 ; 8 : 1222–1232. [CrossRef] [PubMed] [Google Scholar]
  33. Boyer M, Yutin N, Pagnier I, et al. Giant Marseillevirus highlights the role of amoebae as a melting pot in the emergence of chimeric microorganisms. Proc Natl Acad Sci USA 2009 ; 106 : 21848–21853. [CrossRef] [Google Scholar]
  34. Reteno DG, Benamar S, Khalil JB, et al. Faustovirus, an asfarvirus-related new lineage of giant viruses infecting amoebae. J Virol 2015 ; 89 : 6585–6594. [CrossRef] [PubMed] [Google Scholar]
  35. Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. IQ-TREE: A fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Mol Biol Evol 2015 ; 32 : 268–274. [CrossRef] [PubMed] [Google Scholar]

Current usage metrics show cumulative count of Article Views (full-text article views including HTML views, PDF and ePub downloads, according to the available data) and Abstracts Views on Vision4Press platform.

Data correspond to usage on the plateform after 2015. The current usage metrics is available 48-96 hours after online publication and is updated daily on week days.

Initial download of the metrics may take a while.