Free Access
Issue
Med Sci (Paris)
Volume 32, Number 11, Novembre 2016
Le microbiote : cet inconnu qui réside en nous
Page(s) 937 - 943
Section Le microbiote : cet inconnu qui réside en nous
DOI https://doi.org/10.1051/medsci/20163211008
Published online 23 December 2016
  1. Whitman WB, Coleman DC, Wiebe WJ. Prokaryotes: the unseen majority. Proc Natl Acad Sci USA 1998 ; 95 : 6578–6583. [CrossRef] [Google Scholar]
  2. Iriberri J, Herndl GJ. Formation and microbial utilization of amorphous aggregates in the sea: Ecological significance. Microbiologia 1995 ; 11 : 309–322. [PubMed] [Google Scholar]
  3. Staley JT, Konopka A. Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annu Rev Microbiol 1985 ; 39 : 321–346. [CrossRef] [PubMed] [Google Scholar]
  4. Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: Proposal for the domains archaea, bacteria, and eucarya. Proc Natl Acad Sci USA 1990 ; 87 : 4576–4579. [CrossRef] [Google Scholar]
  5. Olsen GJ, Lane DJ, Giovannoni SJ, et al. Microbial ecology and evolution: a ribosomal RNA approach. Annu Rev Microbiol 1986 ; 40 : 337–365. [CrossRef] [PubMed] [Google Scholar]
  6. Romby P, Marzi S, Westhof E. La structure atomique du ribosome en pleine lumière. Prix Nobel de Chimie 2009 à Venkatraman Ramakrishnan, Thomas A. Steitz et Ada E. Yonath. Med Sci (Paris) 2009 ; 25 : 977–981. [CrossRef] [EDP Sciences] [PubMed] [Google Scholar]
  7. Dauga C, Doré J, Sghir A. La diversité insoupçonnée du monde microbien. Med Sci (Paris) 2005 ; 21 : 290–296. [CrossRef] [EDP Sciences] [PubMed] [Google Scholar]
  8. Amann RI, Ludwig W. Schleifer KH Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 1995 ; 59 : 143–169. [PubMed] [Google Scholar]
  9. Colwell RR. Viable but nonculturable bacteria, a survival strategy. J Infect Chemother 2000 ; 6 : 121–125. [CrossRef] [PubMed] [Google Scholar]
  10. Tanaka Y, Hanada S, Manome A, et al. Catellibacterium nectariphilum gen. Nov., sp. Nov., which requires a diffusible compound from a strain related to the genus Sphingomonas for vigorous growth. Int J Syst Evol Microbiol 2004 ; 54 : 955–959. [CrossRef] [PubMed] [Google Scholar]
  11. Lennon JT. Jones SE Microbial seed banks: the ecological and evolutionary implications of dormancy. Nat Rev Microbiol 2011 ; 9 : 119–130. [CrossRef] [PubMed] [Google Scholar]
  12. Perna NT, Plunkett G, 3rd, Burland V, et al. Genome sequence of enterohaemorrhagic Escherichia coli O157:H7. Nature 2001 ; 409 : 529–533. [CrossRef] [PubMed] [Google Scholar]
  13. Daubin V, Abby SS. Les transferts horizontaux de gènes et l’arbre de la vie. Med Sci (Paris) 2012 ; 28 : 695–698. [CrossRef] [EDP Sciences] [PubMed] [Google Scholar]
  14. Vernikos G, Medini D, Riley DR, Tettelin H. Ten years of pan-genome analyses. Curr Opin Microbiol 2015 ; 23 : 148–154. [CrossRef] [PubMed] [Google Scholar]
  15. Handelsman J. Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 2004 ; 68 : 669–685. [CrossRef] [PubMed] [Google Scholar]
  16. Burcelin R, Chabo C, Blasco-Baque V, et al. Le microbiote intestinal à l’origine de nouvelles perspectives thérapeutiques pour les maladies métaboliques ?. Med Sci (Paris) 2013 ; 29 : 800–806. [CrossRef] [EDP Sciences] [PubMed] [Google Scholar]
  17. Cani PD, Everard A. Akkermansia muciniphila : une nouvelle cible pour contrôler l’obésité, le diabète de type 2 et l’inflammation ?. Med Sci (Paris) 2014 ; 30 : 125–127. [CrossRef] [EDP Sciences] [PubMed] [Google Scholar]
  18. Andrejak C, Delhaes L. Le microbiome pulmonaire en 2015: une fenêtre ouverte sur les pathologies pulmonaires chroniques. Med Sci (Paris) 2015 ; 31 : 971–978. [CrossRef] [EDP Sciences] [PubMed] [Google Scholar]
  19. Audebert C, Hot D, Lemoine Y, Caboche S. Le séquençage haut-débit : vers un diagnostic basé sur la séquence complète du génome de l’agent infectieux. Med Sci (Paris) 2014 ; 30 : 1144–1151. [CrossRef] [EDP Sciences] [PubMed] [Google Scholar]
  20. El Kaoutari A, Armougom F, Raoult D, Henrissat B. Le microbiote intestinal et la digestion des polysaccharides. Med Sci (Paris) 2014 ; 30 : 259–265. [CrossRef] [EDP Sciences] [PubMed] [Google Scholar]
  21. Sharpton TJ. An introduction to the analysis of shotgun metagenomic data. Front Plant Sci 2014 ; 5 : 209. [CrossRef] [PubMed] [Google Scholar]
  22. Handelsman J, Rondon MR, Brady SF, et al. Molecular biological access to the chemistry of unknown soil microbes: A new frontier for natural products. Chem Biol 1998 ; 5 : R245–R249. [CrossRef] [PubMed] [Google Scholar]
  23. Qin J, Li R, Raes J, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010 ; 464 : 59–65. [CrossRef] [PubMed] [Google Scholar]
  24. Lozupone CA, Stombaugh JI, Gordon JI, et al. Diversity, stability and resilience of the human gut microbiota. Nature 2012 ; 489 : 220–230. [CrossRef] [PubMed] [Google Scholar]
  25. Li J, Jia H, Cai X, et al. An integrated catalog of reference genes in the human gut microbiome. Nat Biotechnol 2014 ; 32 : 834–841. [CrossRef] [PubMed] [Google Scholar]
  26. Sunagawa S, Coelho LP, Chaffron S, et al. Ocean plankton. Structure and function of the global ocean microbiome. Science 2015 ; 348 : 1261359. [CrossRef] [PubMed] [Google Scholar]
  27. Yooseph S, Sutton G, Rusch DB, et al. The Sorcerer ii global ocean sampling expedition: expanding the universe of protein families. PLoS Biol 2007 ; 5 : e16. [CrossRef] [PubMed] [Google Scholar]
  28. Jetten MS, Strous M, van de Pas-Schoonen KT, et al. The anaerobic oxidation of ammonium. FEMS Microbiol Rev 1998 ; 22 : 421–437. [CrossRef] [PubMed] [Google Scholar]
  29. Ettwig KF, Butler MK, Le Paslier D, et al. Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. Nature 2010 ; 464 : 543–548. [CrossRef] [PubMed] [Google Scholar]
  30. Kyrpides NC. Fifteen years of microbial genomics, meeting the challenges and fulfilling the dream. Nat Biotechnol 2009 ; 27 : 627–632. [CrossRef] [PubMed] [Google Scholar]
  31. Turroni F, Marchesi JR, Foroni E, et al. Microbiomic analysis of the bifidobacterial population in the human distal gut. Isme J 2009 ; 3 : 745–751. [CrossRef] [PubMed] [Google Scholar]
  32. Aslam Z, Yasir M, Yoon HS, et al. Diversity of the bacterial community in the rice rhizosphere managed under conventional and no-tillage practices. J Microbiol 2013 ; 51 : 747–756. [CrossRef] [PubMed] [Google Scholar]
  33. Nam YD, Chang HW, Kim KH, et al. Bacterial, archaeal, and eukaryal diversity in the intestines of korean people. J Microbiol 2008 ; 46 : 491–501. [CrossRef] [PubMed] [Google Scholar]
  34. Bartram AK, Lynch MD, Stearns JC, et al. Generation of multimillion-sequence 16s rRNA gene libraries from complex microbial communities by assembling paired-end illumina reads. Appl Environ Microbiol 2011 ; 77 : 3846–3852. [CrossRef] [PubMed] [Google Scholar]
  35. Gloor GB, Hummelen R, Macklaim JM, et al. Microbiome profiling by Illumina sequencing of combinatorial sequence-tagged PCR products. PLoS One 2010 ; 5 : e15406. [CrossRef] [PubMed] [Google Scholar]
  36. Sogin ML, Morrison HG, Huber JA, et al. Microbial diversity in the deep sea and the underexplored rare biosphere. Proc Natl Acad Sci USA 2006 ; 103 : 12115–12120. [CrossRef] [Google Scholar]
  37. Gibson GR, Cummings JH, Macfarlane GT. Use of a three-stage continuous culture system to study the effect of mucin on dissimilatory sulfate reduction and methanogenesis by mixed populations of human gut bacteria. Appl Environ Microbiol 1988 ; 54 : 2750–2755. [PubMed] [Google Scholar]
  38. Jarrell KF, Walters AD, Bochiwal C, et al. Major players on the microbial stage: why archaea are important. Microbiology 2011 ; 157 : 919–936. [CrossRef] [PubMed] [Google Scholar]
  39. St-Pierre B. Wright AD Diversity of gut methanogens in herbivorous animals. Animal 2013 ; 1 : 49–56. [CrossRef] [Google Scholar]
  40. Ohkuma M. Symbioses of flagellates and prokaryotes in the gut of lower termites. Trends Microbiol 2008 ; 16 : 345–352. [CrossRef] [PubMed] [Google Scholar]
  41. Smits LP, Bouter KE, de Vos WM, et al. Therapeutic potential of fecal microbiota transplantation. Gastroenterology 2013 ; 145 : 946–953. [CrossRef] [PubMed] [Google Scholar]
  42. Agrawal M, Aroniadis OC, Brandt LJ, et al. The long-term efficacy and safety of fecal microbiota transplant for recurrent, severe, and complicated Clostridium difficile infection in 146 elderly individuals. J Clin Gastroenterol 2016 ; 50 : 403–407. [PubMed] [Google Scholar]
  43. Le Chatelier E, Nielsen T, Qin J, et al. Richness of human gut microbiome correlates with metabolic markers. Nature 2013 ; 500 : 541–546. [CrossRef] [PubMed] [Google Scholar]
  44. Lederberg J. McCray AT Ome sweet omics: a genealogical treasury of words. Scientist 2001 ; 15 : 8. [Google Scholar]
  45. Burcelin R, Nicolas S, Blasco-Baque V. Microbiotes et maladies métaboliques : de nouveaux concepts pour de nouvelles stratégies thérapeutiques. Med Sci (Paris) 2016 ; 32 : 952–960. [CrossRef] [EDP Sciences] [PubMed] [Google Scholar]
  46. Lagier JC, Raoult D. Culturomics : une méthode d’étude du microbiote humain. Med Sci (Paris) 2016 ; 32 : 923–925. [CrossRef] [EDP Sciences] [PubMed] [Google Scholar]
  47. Lagier JC, Raoult D. Greffe de microbiote fécal et infections : mise au point, perspectives. Med Sci (Paris) 2016 ; 32 : 991–997. [CrossRef] [EDP Sciences] [PubMed] [Google Scholar]
  48. Gaboriau-Routhiau V, Cerf-Bensussan N. Microbiote intestinal et développement du système immunitaire. Med Sci (Paris) 2016 ; 32 : 961–967. [CrossRef] [EDP Sciences] [PubMed] [Google Scholar]
  49. Le Chassaing B. microbiote intestinal, un acteur de la réponse immunitaire adaptative antivirale ?. Med Sci (Paris) 2015 ; 31 : 355–357. [CrossRef] [EDP Sciences] [PubMed] [Google Scholar]

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